Space efficient string search algorithms and data structures
| dc.contributor.author | Deoghare, Pratik, author | |
| dc.contributor.author | McConnell, Ross, advisor | |
| dc.contributor.author | Bohm, Wim, advisor | |
| dc.contributor.author | Hulpke, Alexander, committee member | |
| dc.date.accessioned | 2016-01-11T15:13:50Z | |
| dc.date.available | 2016-01-11T15:13:50Z | |
| dc.date.issued | 2015 | |
| dc.description.abstract | We address the problem of finding all the occurrences of a pattern of length m in a text of length n. We introduce two new data structures, called the Sloppy Suffix Array and the Super Sloppy Suffix Array. These data structures are space efficient, easy to understand and implement. Sloppy suffix arrays can be built faster than suffix arrays with just one array of n integers; the search algorithms for both have the same time complexity of O(m log n). We also give a space efficient representation for positional de Bruijn graphs using suffix arrays. | |
| dc.format.medium | born digital | |
| dc.format.medium | masters theses | |
| dc.identifier | Deoghare_colostate_0053N_13322.pdf | |
| dc.identifier.uri | http://hdl.handle.net/10217/170351 | |
| dc.language | English | |
| dc.language.iso | eng | |
| dc.publisher | Colorado State University. Libraries | |
| dc.relation.ispartof | 2000-2019 | |
| dc.rights | Copyright and other restrictions may apply. User is responsible for compliance with all applicable laws. For information about copyright law, please see https://libguides.colostate.edu/copyright. | |
| dc.subject | algorithm | |
| dc.subject | data structure | |
| dc.subject | space efficient | |
| dc.subject | string search | |
| dc.title | Space efficient string search algorithms and data structures | |
| dc.type | Text | |
| dcterms.rights.dpla | This Item is protected by copyright and/or related rights (https://rightsstatements.org/vocab/InC/1.0/). You are free to use this Item in any way that is permitted by the copyright and related rights legislation that applies to your use. For other uses you need to obtain permission from the rights-holder(s). | |
| thesis.degree.discipline | Computer Science | |
| thesis.degree.grantor | Colorado State University | |
| thesis.degree.level | Masters | |
| thesis.degree.name | Master of Science (M.S.) |
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